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Pathologic was missing because of a .git folder inside.
[yaffs-website] / web / core / themes /
drwxr-xr-x   ..
drwxr-xr-x - bartik tree | history
drwxr-xr-x - classy tree | history
drwxr-xr-x - engines tree | history
drwxr-xr-x - seven tree | history
drwxr-xr-x - stable tree | history
drwxr-xr-x - stark tree | history
Unnamed repository; edit this file 'description' to name the repository.