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Pathologic was missing because of a .git folder inside.
[yaffs-website]
/
web
/
modules
/
contrib
/
advagg
/
drwxr-xr-x
..
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LICENSE.txt
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README.txt
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advagg.admin.js
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advagg.advagg.inc
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advagg.api.php
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advagg.developer-documentation.php
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advagg.drush.inc
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advagg.info.yml
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advagg.install
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advagg.libraries.yml
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advagg.links.menu.yml
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advagg.links.task.yml
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advagg.module
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advagg.permissions.yml
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advagg.routing.yml
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advagg.services.yml
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advagg_bundler
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advagg_cdn
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composer.json
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tests
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