Pathologic was missing because of a .git folder inside.
[yaffs-website] / web / modules / contrib / entity_embed / src / Plugin /
drwxr-xr-x   ..
drwxr-xr-x - CKEditorPlugin
drwxr-xr-x - Derivative
drwxr-xr-x - EmbedType
drwxr-xr-x - Filter
drwxr-xr-x - entity_embed