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Pathologic was missing because of a .git folder inside.
[yaffs-website]
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web
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contrib
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eu_cookie_compliance
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eu_cookie_compliance.config_translation.yml
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eu_cookie_compliance.info.yml
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eu_cookie_compliance.install
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eu_cookie_compliance.libraries.yml
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eu_cookie_compliance.links.menu.yml
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eu_cookie_compliance.links.task.yml
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eu_cookie_compliance.module
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eu_cookie_compliance.permissions.yml
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eu_cookie_compliance.post_update.php
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eu_cookie_compliance.routing.yml
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