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Pathologic was missing because of a .git folder inside.
[yaffs-website]
/
web
/
modules
/
contrib
/
pathauto
/
src
/
drwxr-xr-x
..
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AliasCleaner.php
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3187
AliasCleanerInterface.php
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AliasStorageHelper.php
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3294
AliasStorageHelperInterface.php
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AliasTypeBatchUpdateInterface.php
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AliasTypeInterface.php
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AliasTypeManager.php
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AliasUniquifier.php
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AliasUniquifierInterface.php
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Annotation
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Entity
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EventSubscriber
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Form
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MessengerInterface.php
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PathautoGenerator.php
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2176
PathautoGeneratorInterface.php
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PathautoItem.php
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4095
PathautoPatternInterface.php
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1261
PathautoPatternListBuilder.php
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2227
PathautoState.php
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PathautoWidget.php
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Plugin
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Tests
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VerboseMessenger.php
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