Pathologic was missing because of a .git folder inside.

[yaffs-website] / web / modules / contrib / embed / embed.info.yml

name: Embed
type: module
description: 'Provides a framework for different types of embeds in text editors.'
# core: 8.x
configure: entity.embed_button.collection

# Information added by Drupal.org packaging script on 2017-03-29
version: '8.x-1.0'
core: '8.x'
project: 'embed'
datestamp: 1490755690