Pathologic was missing because of a .git folder inside.

[yaffs-website] / web / modules / contrib / pathauto / pathauto.info.yml

name : 'Pathauto'
description : 'Provides a mechanism for modules to automatically generate aliases for the content they manage.'
# core: 8.x
type: module

dependencies:
- ctools:ctools
- drupal:path
- token:token

configure: entity.pathauto_pattern.collection

recommends:
- redirect:redirect

# Information added by Drupal.org packaging script on 2017-04-29
version: '8.x-1.0'
core: '8.x'
project: 'pathauto'
datestamp: 1493468049