Pathologic was missing because of a .git folder inside.

[yaffs-website] / web / modules / contrib / pathauto / pathauto.permissions.yml

administer pathauto:
  title: 'Administer pathauto'
  description: 'Allows a user to configure patterns for automated aliases and bulk delete URL-aliases.'
notify of path changes:
  title: 'Notify of Path Changes'
  description: 'Determines whether or not users are notified.'